Data downloads

Zebrahub's imaging data is served from a public cloud data server. The large light-sheet volumes are OME-Zarr: open them in napari or with ome-zarr-py using the URLs below — they are stores, not single downloadable files. Sizes shown are the full store; napari streams only the region and resolution being viewed. Smaller files download directly. For the other mirrors (figshare, Google Drive, GEO) see the data page.

List updated 2026-10-05

ZSNS001.json

1.7 KB

Download

ZSNS001.ome.zarr

201.8 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/ZSNS001.ome.zarr

ZSNS001_tail.json

1.7 KB

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ZSNS001_tail.ome.zarr

57.5 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/ZSNS001_tail.ome.zarr

ZSNS001_tail_tracks.csv

464.4 MB

Download

ZSNS001_tracks.csv

849.3 MB

Download

ZSNS002.json

1.6 KB

Download

ZSNS002.ome.zarr

442.5 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/ZSNS002.ome.zarr

ZSNS003.json

1.7 KB

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ZSNS003.ome.zarr

61.8 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/ZSNS003.ome.zarr

ZSNS003_tracks.csv

199.0 MB

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ZSNS004.json

1.7 KB

Download

ZSNS004.ome.zarr

97.0 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/ZSNS004.ome.zarr

ZSNS004_tracks.csv

360.2 MB

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ZSNS005.json

1.7 KB

Download

ZSNS005.ome.zarr

108.0 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/ZSNS005.ome.zarr

ZSNS005_tracks.csv

325.7 MB

Download

ZMNS001.json

2.8 KB

Download

ZMNS001.ome.zarr

311.2 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/multi-view/ZMNS001.ome.zarr

ZMNS002.json

2.8 KB

Download

ZMNS002.ome.zarr

271.4 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/multi-view/ZMNS002.ome.zarr

ZMPM001_green.ome.zarr

25.2 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/multi-view/photo-manipulation/ZMPM001_green.ome.zarr

ZMPM001_red.ome.zarr

439.5 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/multi-view/photo-manipulation/ZMPM001_red.ome.zarr

ZMPM002.ome.zarr

440.4 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/multi-view/photo-manipulation/ZMPM002.ome.zarr

Tracking data

These are Zarr tracking data, not OME-Zarr images. Use the store URLs with zarr.open(url, mode="r") in Python. Remote Zarr groups cannot be opened directly in napari. The ZIP file downloads directly.

2024_03_14_daxi_tracks.zarr

85.7 MB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/tracks_benchmark/2024_03_14_daxi_tracks.zarr

ZSNS001_edges.zarr

384.2 MB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/tracks_benchmark/ZSNS001_edges.zarr

ZSNS001_nodes.zarr

196.9 MB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/tracks_benchmark/ZSNS001_nodes.zarr

ZSNS001_tracks.zarr

1.1 GB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/tracks_benchmark/ZSNS001_tracks.zarr

tracks_int8_20230719.zarr

153.7 MB total

https://d1ph6anzs0iv1p.cloudfront.net/royerlab/zebrahub/imaging/single-objective/tracks_benchmark/tracks_int8_20230719.zarr

tracks_int8_20230719.zarr.zip

121.4 MB

Download